Many Jedi Would Still Have Died - But Others Would Have Survived. Assuming the Council managed to save as many clones as possible from the chips without alerting Palpatine to their plans, many Jedi would be spared from Order 66 or at least given a fighting chance to survive.
If the Clones refuse to carry out Order 66, then they would get their Jedi generals, and tell them of what the chancellor had tried to do. With this information, Yoda would summon an emergency meeting of the Jedi Council, and they would all go to Coruscant, to try and capture the Chancellor.
Clones like Rex, Kix, Gregor, and ARC Troopers removed inhibitor chips and preserved their free will post-Order 66. The Bad Batch, Alpha-Class ARCs, and Cut Lawquane defied Order 66 due to immunity, free-thinking, or lack of contact.
What If Order 66 Was Executed BEFORE The Jedi Confronted Palptine
Did Captain Rex obey Order 66?
Captain Rex was able to resist executing Order 66 because he was able to remove his inhibitor chip. In the Star Wars universe, the inhibitor chips were implanted in the brains of all clone troopers to ensure their loyalty to the Galactic Republic.
The First Order is a fictional military movement and rump state in the Star Wars franchise, introduced in the 2015 film The Force Awakens. It is formed following the fall of the Galactic Empire after the events of Return of the Jedi (1983).
Order 99 was an order arranged by Jedi Master CaptainR1. It turned the storm troopers back to side of the new Republic. During the clone wars, clone commando "Roger" refused Order 66. He was very close to the Jedi he was fighting with.
Order 65 stated that if a majority of the Senate or the Security Council declared that the Supreme Chancellor—at that time Palpatine—was unfit for duty, the Chancellor was to be arrested or, if necessary, killed.
Most of the members' mutations and the ordeal Echo suffered prior to joining caused their inhibitor chips to have less effect, meaning Clone Force 99 was able to disobey Order 66, at least at first, while they were fighting in the Battle of Kaller, and Hunter helped Jedi Padawan Caleb Dume escape the other clones by ...
Rather, Order 66 appears to be a command that can only be given by Palpatine himself, meaning Cut runs little risk of his chip being accidentally triggered in the future.
The Bad Batch's immunity, for lack of a better term, is based in their origin. Each was born with desirable genetic mutations, thanks to Kaminoan science, that earmarked them as candidates to be soldiers superior to their clone brethren. "Obviously, we are different," Tech explains.
Vader did not hunt for Yoda in any cinematic depiction. He and Sidious could not find Yoda as he had exiled himself on the planet Dagobah which had strong dark side energy that masked Yoda's presence in the Force.
According to Star Wars lore, Imperial stormtroopers are men and women who have been recruited (or conscripted) at a young age to serve as expendable foot soldiers of the Empire, gradually replacing clone troopers as their accelerated aging forces them to retire.
The fact that clones could defy the orders that are literally written into their brains caused a crisis of faith in the Empire. Since they couldn't command 100% control over the clones that they managed to ruin, regular conscripted soldiers offered an easier solution. Many of the issues were due to gradual mutations.
Order 66, also known as Clone Protocol 66, Protocol 66, or simply "the Order," was one of top-secret contingency orders that identified all Jedi as traitors to the Galactic Republic and, therefore, subject to summary execution by the Grand Army of the Republic.
Order 69(AKA "clean up") was the idea to kill the entire clone army in one sitting, leaving the Jedi defenseless and exposed by the sudden departure. Palpatine knows the Jedi's weakness is empathy and most will try to help the clones and now it should be easy to either drive the Jedi into hiding or have them killed.
The Executive Order Codes for the Grand Army of the Republic, also known as the 150 general orders, were a set of directives memorized by every clone trooper of the Grand Army of the Galactic Republic.
The order was only documented being used once, in 18 BBY, where Obi-Wan Kenobi and Ferus Olin were attempting to escape Imperial patrols. This happened while Olin was in hiding on Bellassa in the city of Ussa. However, Kenobi believed that the clones would not honor their ultimatum and execute the prisoners anyways.
As both a Sith and the ruler of the Empire, Palpatine took advantage of his clone resources by indoctrinating them with an order to kill Vader. Order 151 is also a credit to the incredible fighting prowess of Clone Troopers, even with their free will removed.
Order 64: Send pink slips to members of the senate. Order 65: Play gloomy choir muzak in new Death Star. Order 66: Kill all the Jedi. Order 67: REVISE ORDER 66 – I meant to say, “BILL” the Jedi for reimbursement of the clone army.
For most of the Clone Wars, the 501st Legion was led by Jedi General Anakin Skywalker, Jedi Commander Ahsoka Tano, and Clone Captain Rex, who served as their first in command.
Rex tells Jesse he has the situation under control, but Jesse says he must follow orders, and if Rex doesn't, he will. Rex reasons that Order 66 was to execute the Jedi, but Ahsoka is no longer a Jedi.
When Chancellor Palpatine - in reality the Sith Lord Darth Sidious - issued Order 66, the 501st became the personal unit of his apprentice, Darth Vader.
